From 84f5e4352c6cfd755d6e8f6fb11fe25e82561507 Mon Sep 17 00:00:00 2001
From: jsabban <jules.sabban@inrae.fr>
Date: Mon, 18 Nov 2024 11:18:45 +0100
Subject: [PATCH] Remove fastq adding to readset
Because is already done in COPY_TO_SAVE subworkflow
Ref: #123
---
sub-workflows/local/ngl.nf | 1 -
1 file changed, 1 deletion(-)
diff --git a/sub-workflows/local/ngl.nf b/sub-workflows/local/ngl.nf
index d5102d5..968e899 100644
--- a/sub-workflows/local/ngl.nf
+++ b/sub-workflows/local/ngl.nf
@@ -61,7 +61,6 @@ workflow NGL {
MD5SUM_FASTQ(fq.groupTuple())
- ADD_RS_RAW_FILES(readsets_created, MD5SUM_FASTQ.out.md5sum.map{it -> it[1]}, 'RAW', ready)
UPDATE_STATE_FQC(readsets_created, 'F-QC', multiqc_html)
techno = sequencer_name =~ "MiSeq|NovaSeq" ? 'illumina' : sequencer_name =~ "AVITI" ? 'elembio' : 'other'
COPY_TO_SAVE(
--
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