From 964f59074c78c65acf38fd5582fffeb8a0c7ae19 Mon Sep 17 00:00:00 2001
From: Helene Rimbert <helene.rimbert@inra.fr>
Date: Fri, 9 Jun 2023 15:39:43 +0200
Subject: [PATCH] change partition from normal/fast to gdec on every tasks
---
cluster-hpc2.json | 21 ++++++++-------------
1 file changed, 8 insertions(+), 13 deletions(-)
diff --git a/cluster-hpc2.json b/cluster-hpc2.json
index 93a56d6..65f3565 100644
--- a/cluster-hpc2.json
+++ b/cluster-hpc2.json
@@ -3,39 +3,34 @@
{
"time" : "02:00:00",
"c" : 1,
- "partition" : "fast",
+ "partition" : "gdec",
"mem" : "4G",
"jobName" : "magatt_{rule}",
- "error" : "slurm/%x-%J.log",
- "output" : "slurm/%x-%J.log"
+ "error" : "slurm-%x-%J.log",
+ "output" : "slurm-%x-%J.log"
},
"mapHomologousRegions" :
{
"time" : "1-00:00:00",
- "mem" : "8G",
- "partition" : "normal"
+ "mem" : "8G"
},
"gmapRescue":
{
"time" : "3-00:00:00",
- "mem" : "8G",
- "partition" : "long"
+ "mem" : "8G"
},
"gmapIndexTarget":
{
"time" : "1-00:00:00",
- "mem" : "64G",
- "partition" : "normal"
+ "mem" : "64G"
},
"indexQuery":
{
- "time" : "01:00:00",
- "partition" : "normal"
+ "time" : "01:00:00"
},
"indexTarget":
{
- "time" : "01:10:00",
- "partition" : "normal"
+ "time" : "01:10:00"
},
"selectMappedISBP":
{
--
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