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Commit fa2f10b6 authored by Alexis Mergez's avatar Alexis Mergez
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Fixed syri figures path in asm JSON

parent dae94a53
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......@@ -147,12 +147,12 @@ if args.contig_pos:
if args.syri_asm:
assembly["Syri_hap"] = {
hap: f"data/asm.syri.figs/Pan1c.{args.name}.{hap.replace('#', '.hap')}.syri.mm2.png" for hap in cdf.index.get_level_values(1).unique() if hap != args.ref
hap: f"data/asm.syri.figs/Pan1c.{args.name}.{hap.replace('#', '.hap')}.syri_mm2.png" for hap in cdf.index.get_level_values(1).unique() if hap != args.ref
}
if args.syri_chr:
assembly["Syri_chr"] = {
chrid: f"data/chrInput.syri.figs/Pan1c.{args.name}.{chrid}.syri.png" for chrid in cdf.index.get_level_values(0).unique()
chrid: f"data/chrInput.syri.figs/Pan1c.{args.name}.{chrid}.syri_mm2.png" for chrid in cdf.index.get_level_values(0).unique()
}
with open(args.output, "w") as handle:
......
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