Resolve "mise à jour des données de Genbank" (!7) · Merge requests · Omnicrobe / text-mining-workflow · GitLab

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Merged Mouhamadou Ba requested to merge 21-mise-a-jour-des-donnees-de-genbank into master 4 years ago

Closes #21 (closed)

Edited 4 years ago by Mouhamadou Ba

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Mouhamadou Ba added Priority: High Topic: Datasources labels 4 years ago

added Priority: High Topic: Datasources labels
Mouhamadou Ba @mandiayba · 4 years ago

Author Owner
Mise à jour des données de Genbank :

ajouter les nouvelles données de genbank

mettre à jour le pipeline snakemake et le script pre-traitement

tester le module d'extraction de Genbank

vérifier les effets sur les autres modules du wf globale

Edited 4 years ago by Mouhamadou Ba
Louise Deleger added 2 commits 4 years ago
added 2 commits

0115b9a0 - Updated to process new GenBank file

41c10924 - Updated to process new GenBank file

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Louise Deleger added 1 commit 4 years ago
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9d2010b4 - new GenBank file

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Louise Deleger added 1 commit 4 years ago
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caf732f8 - Added inhibit-syntax parameter

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Mouhamadou Ba added 1 commit 4 years ago
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fd33b6cf - add : script requesting genbank data

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Mouhamadou Ba added 1 commit 4 years ago
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62cae55b - Update extractGB.py

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Mouhamadou Ba added 1 commit 4 years ago
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5e1f8b92 - Update softwares/Florilege/scripts/extractGB.py

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bb2ac939 - Update softwares/Florilege/scripts/extractGB.py

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b77fbe79 - Update softwares/Florilege/scripts/extractGB.py

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65fb06ae - Update process_GenBank_corpus.snakefile

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Mouhamadou Ba added 1 commit 4 years ago
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621815e5 - Update softwares/Florilege/scripts/extractGB.py

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Mouhamadou Ba added 1 commit 4 years ago
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5dcd234d - Update softwares/Florilege/scripts/extractGB.py

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Mouhamadou Ba added 1 commit 4 years ago
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5dd0820c - Update process_GenBank_corpus.snakefile

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7178bebf - update diagram

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Mouhamadou Ba added 1 commit 4 years ago
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ce355618 - update diagram

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Mouhamadou Ba added 1 commit 4 years ago
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7c0e2c24 - update diagram

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3c026ea3 - Update docs/4-process-genbank-data.md, process_GenBank_corpus.snakefile files

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a72c555b - Update docs/4-process-genbank-data.md

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1446915d - Update docs/4-process-genbank-data.md

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