- Dec 15, 2020
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Helene Rimbert authored
bug: if cds and mapping attributes existed in query GFF file, values were collapsed. Now the values correspond to the current anchring results.
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Helene Rimbert authored
convert gff3 to txt for transcripts from a single gene mapped on different chromosome while runnin gmap on whole genome
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Helene Rimbert authored
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Helene Rimbert authored
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Helene Rimbert authored
Parallelisation julius See merge request !1
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Helene Rimbert authored
remove temporary fasta files to loawer disk usage. lower coverage and identity threshold in gmap rescue
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- Nov 27, 2020
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Helene Rimbert authored
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- Nov 24, 2020
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Helene Rimbert authored
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Helene Rimbert authored
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Helene Rimbert authored
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- Nov 23, 2020
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Helene Rimbert authored
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Helene Rimbert authored
add input pointing to the mapping/chrom/temp directory containing all the mapping files (blat, gmap)
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Helene Rimbert authored
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- Nov 19, 2020
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Helene Rimbert authored
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- Nov 18, 2020
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Helene Rimbert authored
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Helene Rimbert authored
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Helene Rimbert authored
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Helene Rimbert authored
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Helene Rimbert authored
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Helene Rimbert authored
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Helene Rimbert authored
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Helene Rimbert authored
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- Nov 17, 2020
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Helene Rimbert authored
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Helene Rimbert authored
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- Nov 13, 2020
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Helene Rimbert authored
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Helene Rimbert authored
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Helene Rimbert authored
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Helene Rimbert authored
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Helene Rimbert authored
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Helene Rimbert authored
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Helene Rimbert authored
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Helene Rimbert authored
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- Jul 02, 2020
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Helene Rimbert authored
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- Jun 17, 2020
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Helene Rimbert authored
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Helene Rimbert authored
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Helene Rimbert authored
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Helene Rimbert authored
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Helene Rimbert authored
now the nomenclature of the new geen ids can be setup in the config.yaml file. Also 2 new rules to compile the blat results and the anchoring summary
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Helene Rimbert authored
BUG: tag GMAP_Wholegenome was not added into the final GFF file. this is now corrected in reformatGmapWGGFF.py script
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- Jun 16, 2020
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Helene Rimbert authored
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