bug: if cds and mapping attributes existed in query GFF file, values were collapsed. Now the values correspond to the current anchring results.

convert gff3 to txt for transcripts from a single gene  mapped on different chromosome while runnin gmap on whole genome

Parallelisation julius

See merge request !1

remove temporary fasta files to loawer disk usage. lower coverage and identity threshold in gmap rescue

add input pointing to the mapping/chrom/temp directory containing all the mapping files (blat, gmap)

now the nomenclature of the new geen ids can be setup in the config.yaml file. Also 2 new rules to compile the blat results and the anchoring summary

BUG: tag GMAP_Wholegenome was not added into the final GFF file. this is now corrected in reformatGmapWGGFF.py script